PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g01320
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 249aa    MW: 27322.5 Da    PI: 6.5086
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g01320genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001195117123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C + F ++  L  H++ H
  CA12g01320  95 FSCNFCQRKFYSSQALGGHQNAH 117
                 89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.94E-693122No hitNo description
PROSITE profilePS5015710.9995122IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MQTPRFNLEV EALFEDDSDI TSQVASNVCV GETFADPSKN SVIDFTQLNS EPVSLDLSLN  60
QDSIGGFSVS STSESSNELA TTQTSVSGPG FQRVFSCNFC QRKFYSSQAL GGHQNAHKRE  120
RILAKRAMRM GVFSGRYANL ATLPLHRSTI RSLGIKAHAS LHQVSAPAIR PLDFKTSARF  180
EYDNRQSPPL YMENDVADQL VLWPGSFRQV TNPSTSHTNF ALPGCSNVTL TPYVEKDEPI  240
APDLTLRL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552416.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_016552417.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_016552418.10.0PREDICTED: zinc finger protein 4-like
SwissprotQ392631e-36ZFP4_ARATH; Zinc finger protein 4
TrEMBLM1B1401e-162M1B140_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000346891e-162(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12832347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.18e-38zinc finger protein 4